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Cartilaginous fishes offer unique insights into the evolution of the nuclear receptor gene repertoire in gnathostomes. General and Comparative Endocrinology, 295, Article 113527
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Fonseca, E.S.S. & Ruivo, R. & Machado, A.M. & Conrado, F. & Tay, B.H. & Venkatesh, B. & Santos, M.M. & Castro, L.F.C. (2019)
Evolutionary Plasticity in Detoxification Gene Modules: The Preservation and Loss of the Pregnane X Receptor in Chondrichthyes Lineages. International Journal of Molecular Sciences, 20(9), Article 2331
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Katsu, Y. & Kohno, S. & Oka, K. & Lin, X.Z. & Otake, S. & Pillai, N.E. & Takagi, W. & Hyodo, S. & Venkatesh, B. & Baker, M.E. (2019)
Transcriptional activation of elephant shark mineralocorticoid receptor by corticosteroids, progesterone, and spironolactone. Science Signaling, 12(584): eaar2668
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Gaillard, A.L. & Tay, B.H. & Sirkin, D.I.P. & Lafont, A.G. & Deflori, C. & Vissio, P.G. & Mazan, S. & Dufour, S. & Venkatesh, B. & Tostivint, H. (2018)
Characterization of Gonadotropin-Releasing Hormone (GnRH) Genes From Cartilaginous Fish: Evolutionary Perspectives. Frontiers in Neuroscience, 12, Article 607
DOI: 10.3389/fnins.2018.00607

Opazo, J.C. & Lee, A.P. & Hoffmann, F.G. & Toloza-Villalobos, J. & Burmester, T. & Venkatesh, B. & Storz, J.F. (2015)
Ancient duplications and expression divergence in the globin gene superfamily of vertebrates: Insights from the elephant shark genome and transcriptome. Molecular Biology and Evolution, 32(7), 1684–1694
DOI: 10.1093/molbev/msv054

Venkatesh, B. & Lee, A.P. & Ravi, V. & Maurya, A.K. & Korzh, V. & Lim, Z.W. & Ingham, P.W. & Boehm, T. & Brenner, S. & Warren, W.C. (2014)
On the origin of SCPP genes. Evolution & Development, 16(3), 125–126
DOI: 10.1111/ede.12072

Venkatesh, B. & Ohta, Y. (2014)
The Shark-Family (Cartilaginous Fish) Immunogenome. In S.L. Smith, R.B. Sim, M.F. Flajnik (Eds.) Immunobiology of the Shark (pp. 249–254). CRC Press

Venkatesh, B. & Lee, A.P. & Ravi, V. & Maurya, A.K. & Lian, M.M. & Swann, J.B. & Ohta, Y. & Flajnik, M.F. & Sutoh, Y. & Kasahara, M. & Hoon, S. & Gangu, V. & Roy, S.W. & Irimia, M. & Korzh, V. & Kondrychyn, I. & Lim, Z.W. & Tay, B.-H. & Tohari, S. & Kong, K.W. & Ho, S. & Lorente-Galdos, B. & Quilez, J. & Marques-Bonet, T. & Raney, B.J. (2014)
Elephant shark genome provides unique insights into gnathostome evolution. Nature, 505, 174–179
DOI: 10.1038/nature12826

Nah, G.S.S. & Lim, Z.W. & Tay, B.-H. & Osato, M. & Venkatesh, B. (2014)
Runx Family Genes in a Cartilaginous Fish, the Elephant Shark (Callorhinchus milii). PLoS ONE, 9(4), Article e93816
DOI: 10.1371/journal.pone.0093816

Ravi, V. & Bhatia, S. & Gautier, P. & Loosli, F. & Tay, B.-H. & Tay, A. & Murdoch, E. & Coutinho, P. & Van Heyningen, V. & Brenner, S. & Venkatesh, B. & Kleinjan, D.A. (2013)
Sequencing of Pax6 Loci from the Elephant Shark Reveals a Family of Pax6 Genes in Vertebrate Genomes, Forged by Ancient Duplications and Divergences. PLoS Genetics, 9(1), Article e1003177
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d'Souza, D.G. & Rana, K. & Milley, K.M. & Maclean, H.E. & Zajac, J.D. & Bell, J. & Brenner, S. & Venkatesh, B. & Richardson, S.J. & Danks, J.A. (2013)
Expression of Wnt signaling skeletal development genes in the cartilaginous fish, elephant shark (Callorhinchus milii). General and Comparative Endocrinology, 193, 1–9
DOI: 10.1016/j.ygcen.2013.06.021

Yamaguchi, Y. & Kaiya, H. & Konno, N. & Iwata, E. & Miyazato, M. & Uchiyama, M. & Bell, J.D. & Toop, T. & Donald, J.A. & Brenner, S. & Venkatesh, B. & Hyodo, S. (2012)
The fifth neurohypophysial hormone receptor is structurally related to the V2-type receptor but functionally similar to V1-type receptors. General and Comparative Endocrinology, 178(3), 519–528
DOI: 10.1016/j.ygcen.2012.07.008

Tan, Y.Y. & Kodzius, R. & Tay, B.-H. & Tay, A. & Brenner, S. & Venkatesh, B. (2012)
Sequencing and Analysis of Full-Length cDNAs, 5′-ESTs and 3′-ESTs from a Cartilaginous Fish, the Elephant Shark (Callorhinchus milii). PLoS ONE, 7(10), Article e47174
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Davies, W.I.L. & Tay, B.-H. & Zheng, L. & Danks, J.A. & Brenner, S. & Foster, R.G. & Collin, S.P. & Hankins, M.W. & Venkatesh, B. & Hunt, D.M. (2012)
Evolution and Functional Characterisation of Melanopsins in a Deep-Sea Chimaera (Elephant Shark, Callorhinchus milii). PLoS ONE, 7(12), Article e51276
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Lee, A.P. & Kerk, S.Y. & Tan, Y.Y. & Brenner, S. & Venkatesh, B. (2011)
Ancient vertebrate conserved noncoding elements have been evolving rapidly in teleost fishes. Molecular Biology and Evolution, 28(3), 1205–1215
DOI: 10.1093/molbev/msq304

Lane, D.P. & Madhumala, A. & Lee, A.P. & Tay, B-H. & Verma, C. & Brenner, S. & Venkatesh, B. (2011)
Conservation of all three p53 family members and Mdm2 and Mdm4 in the cartilaginous fish. Cell Cycle, 10, 4272–4279
DOI: 10.4161/cc.10.24.18567

MacDonald, R.B. & Debiais-Thibaud, M. & Martin, K. & Poitras, L. & Tay, B.-H. & Venkatesh, B. & Ekker, M. (2010)
Functional conservation of a forebrain enhancer from the elephant shark (Callorhinchus milii) in zebrafish and mice. BMC Evolutionary Biology, 10, Article 157
DOI: 10.1186/1471-2148-10-157

Liu, Y. & Ibrahim, A.S. & Tay, B.-H. & Richardson, S.J. & Bell, J. & Walker, T.I. & Brenner, S. & Venkatesh, B. & Danks, J.A. (2010)
Parathyroid hormone gene family in a cartilaginous fish, the elephant shark (Callorhinchus milii). Journal of Bone and Mineral Research, 25(12), 2337–2347
DOI: 10.1002/jbmr.178

Inoue, J.G. & Miya, M. & Lam, K. & Tay, B.-H. & Danks, J.A. & Bell, J. & Walker, T.I. & Venkatesh, B. (2010)
Evolutionary origin and phylogeny of the modern holocephalans (Chondrichthyes: Chimaeriformes): a mitogenomic perspective. Molecular Biology and Evolution, 27(11), 2576–2586
DOI: 10.1093/molbev/msq147

Davies, W.L. & Carvalho, L.S. & Tay, B.-H. & Brenner, S. & Hunt, D.M. & Venkatesh, B. (2009)
Into the blue: gene duplication and loss underlie color vision adaptations in a deep-sea chimaera, the elephant shark Callorhinchus milii. Genome Research, 19(3), 415–426
DOI: 10.1101/gr.084509.108

Larsson, T.A. & Tay, B.-H. & Sundström, G. & Fredriksson, R. & Brenner, S. & Larhammar, D. & Venkatesh, B. (2009)
Neuropeptide Y-family peptides and receptors in the elephant shark, Callorhinchus milii confirm gene duplications before the gnathostome radiation. Genomics, 93(3), 254–260
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Ravi, V. & Lam, K. & Tay, B.-H. & Tay, A. & Brenner, S. & Venkatesh, B. (2009)
Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes. Proceedings of the National Academy of Sciences of the United States of America, 106(38), 16327–16332
DOI: 10.1073/pnas.0907914106

Gwee, P.-C. & Tay, B.-H. & Brenner, S. & Venkatesh, B. (2009)
Characterization of the neurohypophysial hormone gene loci in elephant shark and the Japanese lamprey: origin of the vertebrate neurohypophysial hormone genes. BMC Evolutionary Biology, 9, Article 47
DOI: 10.1186/1471-2148-9-47

Wang, J. & Lee, A.P. & Kodzius, R. & Brenner, S. & Venkatesh, B. (2009)
Large number of ultraconserved elements were already present in the jawed vertebrate ancestor. Molecular Biology and Evolution, 26(3), 487–490
DOI: 10.1093/molbev/msn278

Yu, W.-P. & Rajasegaran, V. & Yew, K. & Loh, W.-L. & Tay, B-H. & Amemiya, C.T. & Brenner, S. & Venkatesh, B. (2008)
Elephant shark sequence reveals unique insights into the evolutionary history of vertebrate genes: A comparative analysis of the protocadherin cluster. Proceedings of the National Academy of Sciences of the United States of America, 105(10), 3819–3824
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Ravi, V. & Venkatesh, B. (2008)
Rapidly evolving fish genomes and teleost diversity. Current Opinion in Genetics & Development, 18(6): 544–550
DOI: 10.1016/j.gde.2008.11.001

Venkatesh, B. & Kirkness, E.F. & Loh, Y.-H. & Halpern, A.L. & Lee, A.P. & Johnson, J. & Dandona, N. & Viswanathan, L.D. & Tay, A. & Venter, J.C. & Strausberg, R.L. & Brenner, S. (2007)
Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLoS Biology, 5(4), Article e101
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Venkatesh, B. & Kirkness, E.F. & Loh, Y.H. & Halpern, A.L. & Lee, A.P. & Johnson, J. & Dandona, N. & Viswanathan, L.D. & Tay, A. & Venter, J.C. & Strausberg, R.L. & Brenner, S. (2006)
Ancient noncoding elements conserved in the human genome. Science, 314(5807), 1892
DOI: 10.1126/science.1130708

Venkatesh, B. & Tay, A. & Dandona, N. & Patil, J.G. & Brenner, S. (2005)
A compact cartilaginous fish model genome. Current Biology, 15(3), R82–R83
DOI: 10.1016/j.cub.2005.01.021